HL_9PKB_117
3D structure
- PDB id
- 9PKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CGGCAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PKB_117 not in the Motif Atlas
- Homologous match to HL_9PN5_107
- Geometric discrepancy: 0.2915
- The information below is about HL_9PN5_107
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 456
Unit IDs
9PKB|1|S2|C|1565
9PKB|1|S2|G|1566
9PKB|1|S2|G|1567
9PKB|1|S2|C|1568
9PKB|1|S2|A|1569
9PKB|1|S2|G|1570
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
Coloring options: