HL_9PKD_014
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GCGGACUGUCCCCAGUGCGC
- Length
- 20 nucleotides
- Bulged bases
- 9PKD|1|L5|G|1178, 9PKD|1|L5|U|1179, 9PKD|1|L5|C|1181, 9PKD|1|L5|C|1182
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|G|1171
9PKD|1|L5|C|1172
9PKD|1|L5|G|1173
9PKD|1|L5|G|1174
9PKD|1|L5|A|1175
9PKD|1|L5|C|1176
9PKD|1|L5|U|1177
9PKD|1|L5|G|1178
9PKD|1|L5|U|1179
9PKD|1|L5|C|1180
9PKD|1|L5|C|1181
9PKD|1|L5|C|1182
9PKD|1|L5|C|1183
9PKD|1|L5|A|1184
9PKD|1|L5|G|1185
9PKD|1|L5|U|1186
9PKD|1|L5|G|1187
9PKD|1|L5|C|1188
9PKD|1|L5|G|1189
9PKD|1|L5|C|1190
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LI
- Ribosomal protein uL16-like
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