HL_9PKD_050

3D structure

PDB id

9PKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ CHX and HHT treated 80S consensus ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGGUCGCGGCCG

Length

12 nucleotides

Bulged bases

9PKD|1|L5|U|2908, 9PKD|1|L5|C|2909, 9PKD|1|L5|G|3585

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKD|1|L5|C|2905
9PKD|1|L5|G|2906
9PKD|1|L5|G|2907
9PKD|1|L5|U|2908
9PKD|1|L5|C|2909
9PKD|1|L5|G|2910
9PKD|1|L5|C|3584
9PKD|1|L5|G|3585
9PKD|1|L5|G|3586
9PKD|1|L5|C|3587
9PKD|1|L5|C|3588
9PKD|1|L5|G|3589

Current chains

Chain L5

28S rRNA

Nearby chains