HL_9PKD_059

3D structure

PDB id

9PKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ CHX and HHT treated 80S consensus ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GACAUGAGAACUCUGAUCGUU

Length

21 nucleotides

Bulged bases

9PKD|1|L5|A|3947, 9PKD|1|L5|A|3954, 9PKD|1|L5|A|4056, 9PKD|1|L5|C|4057, 9PKD|1|L5|U|4058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKD|1|L5|G|3946
9PKD|1|L5|A|3947
9PKD|1|L5|C|3948
9PKD|1|L5|A|3949
9PKD|1|L5|U|3950
9PKD|1|L5|G|3951
9PKD|1|L5|A|3952
9PKD|1|L5|G|3953
9PKD|1|L5|A|3954
9PKD|1|L5|A|4056
9PKD|1|L5|C|4057
9PKD|1|L5|U|4058
9PKD|1|L5|C|4059
9PKD|1|L5|U|4060
9PKD|1|L5|G|4061
9PKD|1|L5|A|4062
9PKD|1|L5|U|4063
9PKD|1|L5|C|4064
9PKD|1|L5|G|4065
9PKD|1|L5|U|4066
9PKD|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Li

60S ribosomal protein L36