HL_9PN5_005

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

9PN5|1|A1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9PN5|1|A1|U|194
9PN5|1|A1|U|195
9PN5|1|A1|G|196
9PN5|1|A1|G|197
9PN5|1|A1|A|198
9PN5|1|A1|A|199
9PN5|1|A1|C|200
9PN5|1|A1|A|201

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A

Chain Ae

60S ribosomal protein L32