HL_9PN5_007

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

9PN5|1|A1|G|218, 9PN5|1|A1|A|219, 9PN5|1|A1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9PN5|1|A1|G|216
9PN5|1|A1|U|217
9PN5|1|A1|G|218
9PN5|1|A1|A|219
9PN5|1|A1|G|220
9PN5|1|A1|A|221
9PN5|1|A1|A|222
9PN5|1|A1|U|223
9PN5|1|A1|C|224

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A