HL_9PN5_009

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

9PN5|1|A1|G|304, 9PN5|1|A1|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9PN5|1|A1|G|303
9PN5|1|A1|G|304
9PN5|1|A1|U|305
9PN5|1|A1|A|306
9PN5|1|A1|A|307
9PN5|1|A1|A|308
9PN5|1|A1|U|309
9PN5|1|A1|U|310
9PN5|1|A1|C|311
9PN5|1|A1|C|312

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AN

Large ribosomal subunit protein eL15A

Chain Aa

60S ribosomal protein L28

Chain Ai

60S ribosomal protein L36-A

Chain Ao

Large ribosomal subunit protein eL42A