HL_9PN5_012

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

9PN5|1|A1|C|543, 9PN5|1|A1|C|544, 9PN5|1|A1|U|545, 9PN5|1|A1|C|546, 9PN5|1|A1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|U|541
9PN5|1|A1|G|542
9PN5|1|A1|C|543
9PN5|1|A1|C|544
9PN5|1|A1|U|545
9PN5|1|A1|C|546
9PN5|1|A1|G|547
9PN5|1|A1|G|548
9PN5|1|A1|U|549
9PN5|1|A1|A|550

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain AS

Large ribosomal subunit protein eL20A