HL_9PN5_014

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UCUUG(1MA)AACA

Length

10 nucleotides

Bulged bases

9PN5|1|A1|C|648

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9PN5|1|A1|U|640
9PN5|1|A1|C|641
9PN5|1|A1|U|642
9PN5|1|A1|U|643
9PN5|1|A1|G|644
9PN5|1|A1|1MA|645
9PN5|1|A1|A|646
9PN5|1|A1|A|647
9PN5|1|A1|C|648
9PN5|1|A1|A|649

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain Aa

60S ribosomal protein L28

Chain Ae

60S ribosomal protein L32