HL_9PN5_015

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUGUAAAAC

Length

9 nucleotides

Bulged bases

9PN5|1|A1|U|689, 9PN5|1|A1|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_18470.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9PN5|1|A1|G|686
9PN5|1|A1|U|687
9PN5|1|A1|G|688
9PN5|1|A1|U|689
9PN5|1|A1|A|690
9PN5|1|A1|A|691
9PN5|1|A1|A|692
9PN5|1|A1|A|693
9PN5|1|A1|C|694

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4-A

Chain AL

60S ribosomal protein L13-A

Chain AN

Large ribosomal subunit protein eL15A

Chain AY

60S ribosomal protein L26-A