HL_9PN5_023

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9PN5|1|A1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9PN5|1|A1|C|1076
9PN5|1|A1|U|1077
9PN5|1|A1|U|1078
9PN5|1|A1|A|1079
9PN5|1|A1|A|1080
9PN5|1|A1|U|1081
9PN5|1|A1|U|1082
9PN5|1|A1|G|1083

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AT

60S ribosomal protein L21-A

Chain Ab

Large ribosomal subunit protein eL29