HL_9PN5_027

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

9PN5|1|A1|G|1268, 9PN5|1|A1|U|1269, 9PN5|1|A1|A|1270, 9PN5|1|A1|A|1271, 9PN5|1|A1|C|1272, 9PN5|1|A1|A|1273, 9PN5|1|A1|A|1274

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|G|1266
9PN5|1|A1|U|1267
9PN5|1|A1|G|1268
9PN5|1|A1|U|1269
9PN5|1|A1|A|1270
9PN5|1|A1|A|1271
9PN5|1|A1|C|1272
9PN5|1|A1|A|1273
9PN5|1|A1|A|1274
9PN5|1|A1|C|1275

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Am

Ubiquitin-ribosomal protein eL40A fusion protein