HL_9PN5_028

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

9PN5|1|A1|G|1349, 9PN5|1|A1|A|1350, 9PN5|1|A1|U|1353, 9PN5|1|A1|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|U|1347
9PN5|1|A1|U|1348
9PN5|1|A1|G|1349
9PN5|1|A1|A|1350
9PN5|1|A1|U|1351
9PN5|1|A1|A|1352
9PN5|1|A1|U|1353
9PN5|1|A1|G|1354
9PN5|1|A1|A|1355
9PN5|1|A1|U|1356
9PN5|1|A1|G|1357

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AE

Large ribosomal subunit protein eL6A

Chain AQ

60S ribosomal protein L18-A