HL_9PN5_033
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CCUGAUUUUAUGCAGG
- Length
- 16 nucleotides
- Bulged bases
- 9PN5|1|A1|A|1566, 9PN5|1|A1|U|1567, 9PN5|1|A1|U|1568, 9PN5|1|A1|U|1569, 9PN5|1|A1|U|1570, 9PN5|1|A1|U|1572, 9PN5|1|A1|C|1574, 9PN5|1|A1|A|1575, 9PN5|1|A1|G|1576
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76195.2
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9PN5|1|A1|C|1562
9PN5|1|A1|C|1563
9PN5|1|A1|U|1564
9PN5|1|A1|G|1565
9PN5|1|A1|A|1566
9PN5|1|A1|U|1567
9PN5|1|A1|U|1568
9PN5|1|A1|U|1569
9PN5|1|A1|U|1570
9PN5|1|A1|A|1571
9PN5|1|A1|U|1572
9PN5|1|A1|G|1573
9PN5|1|A1|C|1574
9PN5|1|A1|A|1575
9PN5|1|A1|G|1576
9PN5|1|A1|G|1577
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- Large ribosomal subunit protein eL8A
- Chain AX
- 60S ribosomal protein L25
Coloring options: