HL_9PN5_038

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

9PN5|1|A1|C|1762, 9PN5|1|A1|U|1763, 9PN5|1|A1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76640.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9PN5|1|A1|C|1759
9PN5|1|A1|A|1760
9PN5|1|A1|C|1761
9PN5|1|A1|C|1762
9PN5|1|A1|U|1763
9PN5|1|A1|U|1764
9PN5|1|A1|U|1765
9PN5|1|A1|G|1766

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A

Chain AX

60S ribosomal protein L25