HL_9PN5_044

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UCUAAUU(1MA)AAA

Length

11 nucleotides

Bulged bases

9PN5|1|A1|A|2138, 9PN5|1|A1|A|2139, 9PN5|1|A1|U|2140, 9PN5|1|A1|A|2144

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9PN5|1|A1|U|2135
9PN5|1|A1|C|2136
9PN5|1|A1|U|2137
9PN5|1|A1|A|2138
9PN5|1|A1|A|2139
9PN5|1|A1|U|2140
9PN5|1|A1|U|2141
9PN5|1|A1|1MA|2142
9PN5|1|A1|A|2143
9PN5|1|A1|A|2144
9PN5|1|A1|A|2145

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Aj

60S ribosomal protein L37-A