HL_9PN5_048

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9PN5|1|A1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9PN5|1|A1|U|2292
9PN5|1|A1|C|2293
9PN5|1|A1|U|2294
9PN5|1|A1|A|2295
9PN5|1|A1|A|2296
9PN5|1|A1|U|2297
9PN5|1|A1|U|2298
9PN5|1|A1|A|2299
9PN5|1|A1|G|2300

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA