HL_9PN5_053

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

U(UR3)AAACGAUAACG

Length

13 nucleotides

Bulged bases

9PN5|1|A1|A|2637, 9PN5|1|A1|C|2644

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.3

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9PN5|1|A1|U|2633
9PN5|1|A1|UR3|2634
9PN5|1|A1|A|2635
9PN5|1|A1|A|2636
9PN5|1|A1|A|2637
9PN5|1|A1|C|2638
9PN5|1|A1|G|2639
9PN5|1|A1|A|2640
9PN5|1|A1|U|2641
9PN5|1|A1|A|2642
9PN5|1|A1|A|2643
9PN5|1|A1|C|2644
9PN5|1|A1|G|2645

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

Large ribosomal subunit protein uL16

Chain AT

60S ribosomal protein L21-A

Chain Ab

Large ribosomal subunit protein eL29