HL_9PN5_055

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9PN5|1|A1|C|2693
9PN5|1|A1|A|2694
9PN5|1|A1|A|2695
9PN5|1|A1|A|2696
9PN5|1|A1|A|2697
9PN5|1|A1|G|2698
9PN5|1|A1|G|2699
9PN5|1|A1|G|2700

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

Large ribosomal subunit protein uL16

Chain AT

60S ribosomal protein L21-A

Chain Ao

Large ribosomal subunit protein eL42A