HL_9PN5_059

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.3

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9PN5|1|A1|C|2840
9PN5|1|A1|G|2841
9PN5|1|A1|U|2842
9PN5|1|A1|U|2843
9PN5|1|A1|C|2844
9PN5|1|A1|A|2845
9PN5|1|A1|U|2846
9PN5|1|A1|A|2847
9PN5|1|A1|G|2848

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

Large ribosomal subunit protein uL16

Chain Am

Ubiquitin-ribosomal protein eL40A fusion protein