HL_9PN5_060

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9PN5|1|A1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9PN5|1|A1|A|2897
9PN5|1|A1|G|2898
9PN5|1|A1|C|2899
9PN5|1|A1|A|2900
9PN5|1|A1|G|2901
9PN5|1|A1|A|2902
9PN5|1|A1|A|2903
9PN5|1|A1|U|2904

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein uL6A

Chain Am

Ubiquitin-ribosomal protein eL40A fusion protein