HL_9PN5_065

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9PN5|1|A1|G|3116, 9PN5|1|A1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

9PN5|1|A1|C|3110
9PN5|1|A1|U|3111
9PN5|1|A1|G|3112
9PN5|1|A1|A|3113
9PN5|1|A1|A|3114
9PN5|1|A1|C|3115
9PN5|1|A1|G|3116
9PN5|1|A1|C|3117
9PN5|1|A1|C|3118
9PN5|1|A1|U|3119
9PN5|1|A1|C|3120
9PN5|1|A1|U|3121
9PN5|1|A1|A|3122
9PN5|1|A1|A|3123
9PN5|1|A1|G|3124

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein uL6A

Chain AO

Large ribosomal subunit protein uL13A

Chain Am

Ubiquitin-ribosomal protein eL40A fusion protein