HL_9PN5_080

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

9PN5|1|B5|C|190, 9PN5|1|B5|C|191, 9PN5|1|B5|U|192, 9PN5|1|B5|U|193, 9PN5|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|B5|C|186
9PN5|1|B5|G|187
9PN5|1|B5|A|188
9PN5|1|B5|C|189
9PN5|1|B5|C|190
9PN5|1|B5|C|191
9PN5|1|B5|U|192
9PN5|1|B5|U|193
9PN5|1|B5|U|194
9PN5|1|B5|G|195
9PN5|1|B5|G|196
9PN5|1|B5|A|197
9PN5|1|B5|A|198
9PN5|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

Small ribosomal subunit protein eS8A