HL_9PN5_081

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUCUUCGGAC

Length

10 nucleotides

Bulged bases

9PN5|1|B5|U|229, 9PN5|1|B5|U|231, 9PN5|1|B5|G|234

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|B5|G|228
9PN5|1|B5|U|229
9PN5|1|B5|C|230
9PN5|1|B5|U|231
9PN5|1|B5|U|232
9PN5|1|B5|C|233
9PN5|1|B5|G|234
9PN5|1|B5|G|235
9PN5|1|B5|A|236
9PN5|1|B5|C|237

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

Small ribosomal subunit protein eS6A