HL_9PN5_082

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

9PN5|1|B5|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9PN5|1|B5|G|243
9PN5|1|B5|A|244
9PN5|1|B5|U|245
9PN5|1|B5|G|246
9PN5|1|B5|A|247
9PN5|1|B5|U|248
9PN5|1|B5|U|249
9PN5|1|B5|C|250

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

Small ribosomal subunit protein eS4A

Chain BG

Small ribosomal subunit protein eS6A

Chain BL

Small ribosomal subunit protein uS17A