HL_9PN5_084

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

9PN5|1|B5|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9PN5|1|B5|G|330
9PN5|1|B5|A|331
9PN5|1|B5|U|332
9PN5|1|B5|A|333
9PN5|1|B5|G|334
9PN5|1|B5|U|335
9PN5|1|B5|G|336
9PN5|1|B5|G|337
9PN5|1|B5|C|338

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

Small ribosomal subunit protein eS8A

Chain BL

Small ribosomal subunit protein uS17A