HL_9PN5_086

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9PN5|1|B5|C|402, 9PN5|1|B5|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.3

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|C|393
9PN5|1|B5|C|394
9PN5|1|B5|U|395
9PN5|1|B5|G|396
9PN5|1|B5|A|397
9PN5|1|B5|G|398
9PN5|1|B5|A|399
9PN5|1|B5|A|400
9PN5|1|B5|A|401
9PN5|1|B5|C|402
9PN5|1|B5|G|403
9PN5|1|B5|G|404

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

Small ribosomal subunit protein eS4A

Chain BG

Small ribosomal subunit protein eS6A

Chain BI

Small ribosomal subunit protein eS8A

Chain BY

Small ribosomal subunit protein eS24A