HL_9PN5_087

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9PN5|1|B5|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9PN5|1|B5|C|414
9PN5|1|B5|C|415
9PN5|1|B5|A|416
9PN5|1|B5|A|417
9PN5|1|B5|G|418
9PN5|1|B5|G|419

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain BG

Small ribosomal subunit protein eS6A