HL_9PN5_090

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|A|520
9PN5|1|B5|A|521
9PN5|1|B5|U|522
9PN5|1|B5|G|523
9PN5|1|B5|U|524
9PN5|1|B5|A|525
9PN5|1|B5|A|526
9PN5|1|B5|A|527
9PN5|1|B5|U|528
9PN5|1|B5|A|529
9PN5|1|B5|C|530
9PN5|1|B5|C|531
9PN5|1|B5|U|532

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

Small ribosomal subunit protein uS4A

Chain BY

Small ribosomal subunit protein eS24A