HL_9PN5_093

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

9PN5|1|B5|U|779, 9PN5|1|B5|U|781, 9PN5|1|B5|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9PN5|1|B5|C|777
9PN5|1|B5|G|778
9PN5|1|B5|U|779
9PN5|1|B5|A|780
9PN5|1|B5|U|781
9PN5|1|B5|U|782
9PN5|1|B5|G|783

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BY

Small ribosomal subunit protein eS24A