HL_9PN5_094

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

9PN5|1|B5|U|828, 9PN5|1|B5|U|832, 9PN5|1|B5|U|833, 9PN5|1|B5|G|834, 9PN5|1|B5|U|835, 9PN5|1|B5|U|836, 9PN5|1|B5|G|837, 9PN5|1|B5|U|841

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|B5|C|827
9PN5|1|B5|U|828
9PN5|1|B5|A|829
9PN5|1|B5|U|830
9PN5|1|B5|U|831
9PN5|1|B5|U|832
9PN5|1|B5|U|833
9PN5|1|B5|G|834
9PN5|1|B5|U|835
9PN5|1|B5|U|836
9PN5|1|B5|G|837
9PN5|1|B5|G|838
9PN5|1|B5|U|839
9PN5|1|B5|U|840
9PN5|1|B5|U|841
9PN5|1|B5|C|842
9PN5|1|B5|U|843
9PN5|1|B5|A|844
9PN5|1|B5|G|845

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

Small ribosomal subunit protein eS6A

Chain BL

Small ribosomal subunit protein uS17A