HL_9PN5_098

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

9PN5|1|B5|U|1057, 9PN5|1|B5|U|1059, 9PN5|1|B5|U|1060, 9PN5|1|B5|A|1062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87689.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9PN5|1|B5|U|1055
9PN5|1|B5|U|1056
9PN5|1|B5|U|1057
9PN5|1|B5|U|1058
9PN5|1|B5|U|1059
9PN5|1|B5|U|1060
9PN5|1|B5|A|1061
9PN5|1|B5|A|1062
9PN5|1|B5|U|1063
9PN5|1|B5|G|1064

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

Small ribosomal subunit protein eS1A

Chain Bb

Small ribosomal subunit protein eS27A