HL_9PN5_103

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GAGUGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9PN5|1|B5|G|1295
9PN5|1|B5|A|1296
9PN5|1|B5|G|1297
9PN5|1|B5|U|1298
9PN5|1|B5|G|1299
9PN5|1|B5|A|1300
9PN5|1|B5|U|1301
9PN5|1|B5|U|1302

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

Small ribosomal subunit protein uS2A

Chain BC

Small ribosomal subunit protein uS5