HL_9PN5_108

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

9PN5|1|B5|U|1557, 9PN5|1|B5|U|1558, 9PN5|1|B5|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.3

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|A|1550
9PN5|1|B5|U|1551
9PN5|1|B5|U|1552
9PN5|1|B5|G|1553
9PN5|1|B5|U|1554
9PN5|1|B5|A|1555
9PN5|1|B5|A|1556
9PN5|1|B5|U|1557
9PN5|1|B5|U|1558
9PN5|1|B5|A|1559
9PN5|1|B5|U|1560
9PN5|1|B5|U|1561

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

Small ribosomal subunit protein uS19

Chain BS

Small ribosomal subunit protein uS13A

Chain BT

Small ribosomal subunit protein eS19A

Chain Bd

Small ribosomal subunit protein uS14A