HL_9PRD_005
3D structure
- PDB id
- 9PRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- UUCUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9PRD|1|A|A|1855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PRD_005 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.1875
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9PRD|1|A|U|1847
9PRD|1|A|U|1848
9PRD|1|A|C|1849
9PRD|1|A|U|1850
9PRD|1|A|G|1851
9PRD|1|A|C|1852
9PRD|1|A|A|1853
9PRD|1|A|U|1854
9PRD|1|A|A|1855
9PRD|1|A|A|1856
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: