HL_9PRD_053

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

9PRD|1|AA|C|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PRD_053 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.3658

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PRD|1|AA|G|1217
9PRD|1|AA|A|1218
9PRD|1|AA|U|1219
9PRD|1|AA|A|1220
9PRD|1|AA|A|1221
9PRD|1|AA|A|1222
9PRD|1|AA|C|1223
9PRD|1|AA|C|1224
9PRD|1|AA|C|1225
9PRD|1|AA|C|1226

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain Ax

P/P-tRNA