HL_9PRD_058

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GAGUAGAGUGC

Length

11 nucleotides

Bulged bases

9PRD|1|AA|U|1448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PRD|1|AA|G|1440
9PRD|1|AA|A|1441
9PRD|1|AA|G|1442
9PRD|1|AA|U|1443
9PRD|1|AA|A|1444
9PRD|1|AA|G|1445
9PRD|1|AA|A|1446
9PRD|1|AA|G|1447
9PRD|1|AA|U|1448
9PRD|1|AA|G|1449
9PRD|1|AA|C|1450

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial