HL_9PRQ_006

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UAAAAGA

Length

7 nucleotides

Bulged bases

9PRQ|1|A|A|1937, 9PRQ|1|A|G|1939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PRQ_006 not in the Motif Atlas

Geometric match to HL_9E6Q_023

Geometric discrepancy: 0.3534

The information below is about HL_9E6Q_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9PRQ|1|A|U|1934
9PRQ|1|A|A|1935
9PRQ|1|A|A|1936
9PRQ|1|A|A|1937
9PRQ|1|A|A|1938
9PRQ|1|A|G|1939
9PRQ|1|A|A|1940

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain A3

Aurora kinase A-interacting protein

Chain D

39S ribosomal protein L2, mitochondrial