HL_9PRQ_039

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

9PRQ|1|AA|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PRQ_039 not in the Motif Atlas

Homologous match to HL_6CZR_072

Geometric discrepancy: 0.2097

The information below is about HL_6CZR_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.4

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PRQ|1|AA|U|654
9PRQ|1|AA|U|655
9PRQ|1|AA|U|656
9PRQ|1|AA|G|657
9PRQ|1|AA|G|658
9PRQ|1|AA|U|659
9PRQ|1|AA|C|660
9PRQ|1|AA|C|661
9PRQ|1|AA|U|662
9PRQ|1|AA|A|663
9PRQ|1|AA|G|664

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain Az

mRNA