HL_9PRQ_061

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PRQ_061 not in the Motif Atlas

Homologous match to HL_1QU2_003

Geometric discrepancy: 0.2587

The information below is about HL_1QU2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9PRQ|1|Ah|G|54
9PRQ|1|Ah|U|55
9PRQ|1|Ah|U|56
9PRQ|1|Ah|C|57
9PRQ|1|Ah|G|58
9PRQ|1|Ah|A|59
9PRQ|1|Ah|A|60
9PRQ|1|Ah|A|61
9PRQ|1|Ah|C|62

Current chains

Chain Ah

A/T-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Ag

Elongation factor Tu, mitochondrial