HL_9PS0_040

3D structure

PDB id

9PS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

9PS0|1|AA|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PS0_040 not in the Motif Atlas

Homologous match to HL_6CZR_072

Geometric discrepancy: 0.2126

The information below is about HL_6CZR_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.4

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PS0|1|AA|U|654
9PS0|1|AA|U|655
9PS0|1|AA|U|656
9PS0|1|AA|G|657
9PS0|1|AA|G|658
9PS0|1|AA|U|659
9PS0|1|AA|C|660
9PS0|1|AA|C|661
9PS0|1|AA|U|662
9PS0|1|AA|A|663
9PS0|1|AA|G|664

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain Az

mRNA