HL_9PS0_059

3D structure

PDB id

9PS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

9PS0|1|AA|C|1525, 9PS0|1|AA|U|1526

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PS0_059 not in the Motif Atlas

Geometric match to HL_6JQ6_004

Geometric discrepancy: 0.3326

The information below is about HL_6JQ6_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

9PS0|1|AA|U|1522
9PS0|1|AA|A|1523
9PS0|1|AA|A|1524
9PS0|1|AA|C|1525
9PS0|1|AA|U|1526
9PS0|1|AA|A|1527
9PS0|1|AA|A|1528

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AV

28S ribosomal protein S27, mitochondrial