HL_9PSI_066

3D structure

PDB id

9PSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GUUCAAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PSI_066 not in the Motif Atlas

Homologous match to HL_5WWT_002

Geometric discrepancy: 0.4409

The information below is about HL_5WWT_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9PSI|1|Ay|G|53
9PSI|1|Ay|U|54
9PSI|1|Ay|U|55
9PSI|1|Ay|C|56
9PSI|1|Ay|A|57
9PSI|1|Ay|A|58
9PSI|1|Ay|U|59
9PSI|1|Ay|U|60
9PSI|1|Ay|C|61

Current chains

Chain Ay

E/E-tRNA

Nearby chains

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1

Chain z

Large ribosomal subunit protein uL1m