HL_9PSM_035

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PSM_035 not in the Motif Atlas

Homologous match to HL_7A0S_062

Geometric discrepancy: 0.1179

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9PSM|1|A|A|3081
9PSM|1|A|G|3082
9PSM|1|A|U|3083
9PSM|1|A|A|3084
9PSM|1|A|A|3085
9PSM|1|A|U|3086

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Aw

A/P-tRNA

Chain D

39S ribosomal protein L2, mitochondrial