HL_9PZG_007

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PZG_007 not in the Motif Atlas

Geometric match to HL_8B0X_006

Geometric discrepancy: 0.0612

The information below is about HL_8B0X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9PZG|1|A|U|296
9PZG|1|A|G|297
9PZG|1|A|A|298
9PZG|1|A|G|299
9PZG|1|A|A|300
9PZG|1|A|G|301

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain E

Small ribosomal subunit protein uS5

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17