HL_9PZG_022

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PZG_022 not in the Motif Atlas

Geometric match to HL_1NBS_007

Geometric discrepancy: 0.1549

The information below is about HL_1NBS_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9PZG|1|A|A|1012
9PZG|1|A|G|1013
9PZG|1|A|A|1014
9PZG|1|A|G|1015
9PZG|1|A|A|1016
9PZG|1|A|U|1017

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19