HL_9PZG_024

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PZG_024 not in the Motif Atlas

Geometric match to HL_8B0X_021

Geometric discrepancy: 0.0741

The information below is about HL_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9PZG|1|A|U|1076
9PZG|1|A|G|1077
9PZG|1|A|U|1078
9PZG|1|A|G|1079
9PZG|1|A|A|1080
9PZG|1|A|A|1081

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5