HL_9PZG_025

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9PZG|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PZG_025 not in the Motif Atlas

Geometric match to HL_3IVK_005

Geometric discrepancy: 0.3751

The information below is about HL_3IVK_005

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9PZG|1|A|G|1089
9PZG|1|A|U|1090
9PZG|1|A|U|1091
9PZG|1|A|A|1092
9PZG|1|A|A|1093
9PZG|1|A|G|1094
9PZG|1|A|U|1095
9PZG|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2