HL_9Q1Q_001

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAAAUAAUUGGGAUUCCCCC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|1|G|1356
9Q1Q|1|1|U|1357
9Q1Q|1|1|A|1358
9Q1Q|1|1|A|1359
9Q1Q|1|1|A|1360
9Q1Q|1|1|U|1361
9Q1Q|1|1|A|1362
9Q1Q|1|1|A|1363
9Q1Q|1|1|U|1364
9Q1Q|1|1|U|1365
9Q1Q|1|1|G|1366
9Q1Q|1|1|G|1367
9Q1Q|1|1|G|1368
9Q1Q|1|1|A|1369
9Q1Q|1|1|U|1370
9Q1Q|1|1|U|1371
9Q1Q|1|1|C|1372
9Q1Q|1|1|C|1373
9Q1Q|1|1|C|1374
9Q1Q|1|1|C|1375
9Q1Q|1|1|C|1376

Current chains

Chain 1

NediV IRES

Nearby chains

Chain o

eL42