HL_9Q1Q_009

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9Q1Q|1|5|G|134, 9Q1Q|1|5|G|135, 9Q1Q|1|5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_009 not in the Motif Atlas

Geometric match to HL_9BZC_001

Geometric discrepancy: 0.2274

The information below is about HL_9BZC_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9Q1Q|1|5|C|131
9Q1Q|1|5|G|132
9Q1Q|1|5|C|133
9Q1Q|1|5|G|134
9Q1Q|1|5|G|135
9Q1Q|1|5|C|136
9Q1Q|1|5|G|137

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain j

60S ribosomal protein L37